Coabundance analysis using SparCC as implemented in SpiecEasi

Source: R/correlate.R

Coabundance analysis using SparCC as implemented in SpiecEasi

correlate_spiec_easi_sparcc(
  data,
  iterations = 10,
  bootstraps = 200,
  threads = 1
)

Arguments

data

integer matrix of abundance count data. One sample per row and one taxon per column